proteindf_bridge.biopdb module¶

class proteindf_bridge.biopdb.Pdb(file_path=None, mode=None)[source]¶

Bases: object

AmberToolsVer = 22¶

property debug¶

get_atomgroup(select_model=None, select_altloc='A')[source]¶

return AtomGroup object

Return type:: AtomGroup

get_modpdb_atomgroup(ag_protein)[source]¶

Change the name of a residue or atom.: Called by ‘set_by_atomgroup()’

Parameters:: ag_protein (AtomGroup) – AtomGroup object of protein
Returns:: renamed object
Return type:: AtomGroup

load(file_path)[source]¶

renumber()[source]¶

set_by_atomgroup(atomgroup, is_charge2tempfactor=False)[source]¶

Return type:: None

proteindf_bridge.biopdb.main()[source]¶