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ProteinDF_bridge 2026.8.0
ProteinDF_bridge 2026.8.0

Contents

  • Installation
  • Command-line tools
  • proteindf_bridge
    • proteindf_bridge package
      • proteindf_bridge.amber_prmtop module
      • proteindf_bridge.aminoacid module
      • proteindf_bridge.atom module
      • proteindf_bridge.atomgroup module
      • proteindf_bridge.biopdb module
      • proteindf_bridge.bond module
      • proteindf_bridge.common module
      • proteindf_bridge.dbmanager module
      • proteindf_bridge.error module
      • proteindf_bridge.format module
      • proteindf_bridge.functions module
      • proteindf_bridge.gro module
      • proteindf_bridge.ionpair module
      • proteindf_bridge.mail module
      • proteindf_bridge.matrix module
      • proteindf_bridge.mmcif module
      • proteindf_bridge.modeling module
      • proteindf_bridge.mol2 module
      • proteindf_bridge.neutralize module
      • proteindf_bridge.path module
      • proteindf_bridge.periodictable module
      • proteindf_bridge.position module
      • proteindf_bridge.select module
      • proteindf_bridge.ssbond module
      • proteindf_bridge.str_processing module
      • proteindf_bridge.superposer module
      • proteindf_bridge.superposer_quaternion module
      • proteindf_bridge.utils module
      • proteindf_bridge.vector module
      • proteindf_bridge.xyz module
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proteindf_bridge.xyz module¶

class proteindf_bridge.xyz.Xyz(*args, **kwargs)[source]¶

Bases: object

get_atom_group()[source]¶

return AtomGroup object

get_text()[source]¶
load(file_path)[source]¶
save(file_path)[source]¶
set_by_atomgroup(atomgroup)[source]¶
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proteindf_bridge.vector module
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  • proteindf_bridge.xyz module
    • Xyz
      • Xyz.get_atom_group()
      • Xyz.get_text()
      • Xyz.load()
      • Xyz.save()
      • Xyz.set_by_atomgroup()