proteindf_bridge.select module

class proteindf_bridge.select.Select

Bases: object

Selecter interface class.

is_match(obj)

Return True if the condition is matched.

Subclasses must implement this method.

class proteindf_bridge.select.Select_Atom(atom, distance=0.1)

Bases: Select

is_match(obj)

Return True if the condition is matched.

Subclasses must implement this method.

class proteindf_bridge.select.Select_AtomGroup(ref_atomgroup, range=1e-05)

Bases: Select

Return the atoms that also exist in the reference atomgroup.

is_match(obj)

Return True if the condition is matched.

Subclasses must implement this method.

class proteindf_bridge.select.Select_Name(query)

Bases: Select

is_match(obj)

Return True if the condition is matched.

Subclasses must implement this method.

class proteindf_bridge.select.Select_Path(query, use_wildcard=True)

Bases: Select

Deprecated since version Use: Select_Path_wildcard instead. Will be removed in a future version.

is_match(obj)

Return True if the condition is matched.

Subclasses must implement this method.

class proteindf_bridge.select.Select_PathRegex(query)

Bases: Select

Select by a regular expression matched against the path.

is_match(obj)

Return True if the condition is matched.

Subclasses must implement this method.

class proteindf_bridge.select.Select_Path_simple(query)

Bases: Select

is_match(obj)

Return True if the condition is matched.

Subclasses must implement this method.

class proteindf_bridge.select.Select_Path_wildcard(query)

Bases: Select

selector using path with wildcard

is_match(obj)

Return True if the condition is matched.

Subclasses must implement this method.

class proteindf_bridge.select.Select_Range(pos, d)

Bases: Select

Select by radius.

is_match(obj)

Return True if the condition is matched.

Subclasses must implement this method.

class proteindf_bridge.select.Select_Symbol(atom_symbol)

Bases: Select

Select by atomic symbol.

is_match(obj)

Return True if the condition is matched.

Subclasses must implement this method.