proteindf_bridge.ssbond module

class proteindf_bridge.ssbond.SSBond(model)

Bases: object

find disulfide bonds in protein models

>>> import os
>>> tmp_pdb = Pdb(os.path.join(os.path.dirname(__file__), 'data', '1hls.pdb'))
>>> models = tmp_pdb.get_atomgroup()
>>> model = models.get_group('model_1')
>>> ssb = SSBond(model)
>>> print(ssb.get_bonds())
[('/model_1/A/6/', '/model_1/A/11/'), ('/model_1/A/7/', '/model_1/B/7/'), ('/model_1/A/20/', '/model_1/B/19/')]

get_bonds()