proteindf_tools

• proteindf_tools package
  • Basis2
    • Basis2.get_basis2()
    • Basis2.get_basisset()
    • Basis2.get_basisset_j()
    • Basis2.get_basisset_xc()
  • BasisSet
    • BasisSet.expand()
    • BasisSet.get_basis2()
    • BasisSet.get_num_of_CGTOs()
    • BasisSet.get_number_of_AOs()
    • BasisSet.get_raw_data()
    • BasisSet.max_shell_type
    • BasisSet.max_shell_type_id
    • BasisSet.name
    • BasisSet.set_by_raw_data()
    • BasisSet.sort()
  • ContractedGTO
    • ContractedGTO.expand()
    • ContractedGTO.get_basis_type()
    • ContractedGTO.get_raw_data()
    • ContractedGTO.get_shell_type()
    • ContractedGTO.get_shell_type_id()
    • ContractedGTO.get_supported_shell_types()
    • ContractedGTO.normalize()
    • ContractedGTO.scale_factor
    • ContractedGTO.set_by_raw_data()
    • ContractedGTO.shell_type
    • ContractedGTO.shell_type_id
  • GaussianParam
    • GaussianParam.basisset
    • GaussianParam.charge
    • GaussianParam.ext_basisset
    • GaussianParam.get_inputfile_contents()
    • GaussianParam.jobtype
    • GaussianParam.title
  • Matrix
    • Matrix.find_header_struct()
    • Matrix.get_size()
    • Matrix.is_loadable()
    • Matrix.load()
    • Matrix.save()
  • OrbInfo
    • OrbInfo.get_atom()
    • OrbInfo.get_atom_id()
    • OrbInfo.get_basis_type()
    • OrbInfo.get_num_of_orbitals()
    • OrbInfo.get_shell_type()
  • PdfParam
  • PdfSim
    • PdfSim.numerical_grad()
    • PdfSim.opt()
    • PdfSim.pop()
    • PdfSim.setup()
    • PdfSim.sp()
    • PdfSim.total_energy()
  • PopEspUtils
    • PopEspUtils.get_RRMS()
  • PopUtils
    • PopUtils.get_atomlist_by_param()
    • PopUtils.set_atomlist()
  • PrimitiveGTO
    • PrimitiveGTO.coef
    • PrimitiveGTO.exp
    • PrimitiveGTO.get_raw_data()
    • PrimitiveGTO.normalize()
    • PrimitiveGTO.set_by_raw_data()
  • QmSim
    • QmSim.method
  • SymmetricMatrix
    • SymmetricMatrix.find_header_struct()
    • SymmetricMatrix.get_size()
    • SymmetricMatrix.is_loadable()
    • SymmetricMatrix.load()
    • SymmetricMatrix.save()
  • Vector
    • Vector.find_header_struct()
    • Vector.is_loadable()
    • Vector.load()
    • Vector.save()
  • Submodules
    • proteindf_tools.basis2 module
      • Basis2
    • proteindf_tools.basisset module
      • BasisSet
      • ContractedGTO
      • PrimitiveGTO
    • proteindf_tools.basisset_parser module
      • BasisSetParser
      • main()
    • proteindf_tools.constants module
    • proteindf_tools.functions module
      • deprecated()
    • proteindf_tools.gauparam module
      • GaussianParam
    • proteindf_tools.matrix module
      • Matrix
      • SymmetricMatrix
    • proteindf_tools.orbinfo module
      • OrbInfo
    • proteindf_tools.pdfarchive_object module
      • PdfArchiveObject
    • proteindf_tools.pdfarchive_sqlite3 module
      • PdfArchive_Sqlite3
    • proteindf_tools.pdfcommon module
      • get_default_pdfparam()
      • load_pdfparam()
      • mpac2py()
      • pdf_home()
      • run_pdf()
      • save_pdfparam()
      • set_basisset()
    • proteindf_tools.pdfgraph module
      • BarGraph
      • DfDistanceVsElementGraph
      • DfDosGraph
      • DfEnergyLevelHistoryGraphH
      • DfEnergyLevelHistoryGraphV
      • DfEnergyLevelTraceGraph
      • DfGraph
      • DfGvalsGraph
      • DfLineChart
      • DfMatrixGraph
      • DfPopulationGraph
      • DfTotalEnergyHistGraph
      • DfVectorGraph
      • EnergyLevelChart
      • Graph
      • GraphConvergenceCheck
      • GraphEnergyLevelHistory
      • GraphEnergyLevelSingle
      • GraphTotalEnergyHistory
      • LineChart
      • MidpointLogNorm
      • MidpointNormalize
    • proteindf_tools.pdfmath module
      • Math
    • proteindf_tools.pdfparam module
      • PdfParam
    • proteindf_tools.pdfparam_hdf5 module
      • PdfParam_H5
    • proteindf_tools.pdfparam_object module
      • PdfParamObject
    • proteindf_tools.pdfsim module
      • PdfSim
    • proteindf_tools.poputils module
      • PopEspUtils
      • PopUtils
    • proteindf_tools.process module
      • Process
    • proteindf_tools.qmsim module
      • QmSim
    • proteindf_tools.report module
      • PdfReport
    • proteindf_tools.vector module
      • Vector